how to visualize methylation level in different gene structure

xyhuang · 04-15-2016, 07:29 AM

Dear All,

I would like to know how to make the figures like below to show the methylation level at genes or TEs, and their 1-kb upstream and downstream regions at the sequence context of CG, CHG, and CHH.
Now I already have the whole genome methylome by BS-seq. Is there any tools to make the figures? or where can i find the sample script (in R or Linux) to do that?

Thanks!

![CG, CHG, and CHH methylation level at genes (A), TEs (B), and their 1-kb upstream and downstream regions][1]

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04-15-2016, 07:29 AM	#1
xyhuang Junior Member Location: UK Join Date: Dec 2012 Posts: 3	how to visualize methylation level in different gene structure Dear All, I would like to know how to make the figures like below to show the methylation level at genes or TEs, and their 1-kb upstream and downstream regions at the sequence context of CG, CHG, and CHH. Now I already have the whole genome methylome by BS-seq. Is there any tools to make the figures? or where can i find the sample script (in R or Linux) to do that? Thanks! ![CG, CHG, and CHH methylation level at genes (A), TEs (B), and their 1-kb upstream and downstream regions][1]