i'm curious, how are you exporting 454 LIMPs to be compatible with SOAP.
We had trouble converting to "Illumina style" LIMPS.
We had trouble converting to "Illumina style" LIMPS.
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python sff_extract -l titanium_linker.fasta -s output.fasta -q output.qual -x output.xml input.sff
# 3kb library avg_ins=3000 reverse_seq=0 asm_flags=3 rank=2 f=input.fasta q=input.fasta.qual
# 3kb library avg_ins=3000 reverse_seq=0 asm_flags=3 rank=2 f=input.fasta q=input.fasta.qual
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