Hi all,
I am struggled myself on this.
I have used CLC workbench for rnaseq analysis using single reads and an annotated reference genome assembly containing tags of “gene” and “mRNA”. The derived mapping sam file contains the alignments of the reads against the “genes” features and the results are quite promisive. However, I would like to find a way in order to visualize my sam (bam) file against the original fasta genome assembly using a editing software like geneious and importing this either as an alignment file or as a separate track against the genome assembly. I would be grateful for any help and suggestions towards this.
Thanks in advance
I am struggled myself on this.
I have used CLC workbench for rnaseq analysis using single reads and an annotated reference genome assembly containing tags of “gene” and “mRNA”. The derived mapping sam file contains the alignments of the reads against the “genes” features and the results are quite promisive. However, I would like to find a way in order to visualize my sam (bam) file against the original fasta genome assembly using a editing software like geneious and importing this either as an alignment file or as a separate track against the genome assembly. I would be grateful for any help and suggestions towards this.
Thanks in advance
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