Hi all,
I have managed to install standalone blast on my computer and it appears to be working correctly. The output file I get (and I have tried a number of different options) never tells me the number of hits my query has against the database I have created, unlike the online ncbi version of blast - is there any way to make standalone blast tell you this?
Also, it seems to make no difference changing the "-v" and "-b" parameters. I know from the online version that I should be getting approximately 4500 hits, but I don't seem to be able to get standalone blast to display them all - any thoughts as to how I can make it do this?
All help gratefully received!
PS this is using blastall -p blastn
I have managed to install standalone blast on my computer and it appears to be working correctly. The output file I get (and I have tried a number of different options) never tells me the number of hits my query has against the database I have created, unlike the online ncbi version of blast - is there any way to make standalone blast tell you this?
Also, it seems to make no difference changing the "-v" and "-b" parameters. I know from the online version that I should be getting approximately 4500 hits, but I don't seem to be able to get standalone blast to display them all - any thoughts as to how I can make it do this?
All help gratefully received!
PS this is using blastall -p blastn
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