SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
LIMS (again) sklages Bioinformatics 6 04-30-2013 07:05 AM
Looking for LIMS scrosby Bioinformatics 3 04-30-2013 06:19 AM
General LIMS versus NGS only LIMS magcha Service Providers 3 02-22-2011 04:58 AM
Bioinformatics/LIMS Data Base Programmer - Job Code: SW06_SeqAnswers IonTorrent Industry Jobs! 0 02-03-2010 08:48 AM
Lims pr0t3us 454 Pyrosequencing 0 05-15-2009 08:19 AM

Reply
 
Thread Tools
Old 02-22-2010, 04:54 AM   #1
aurelielaugraud
Member
 
Location: lyon

Join Date: Aug 2009
Posts: 37
Default bioinformatics LIMS

Hello,
I am looking for a ind of LIMS that would not care of sample traceability but of the analysis traceability.
I would like to know if you are aware of soft (preferably free but I take all the answers) that would be able to keep all the information of which soft has been used, which version of this soft, where is the data ...

thanks a lot
aurelielaugraud is offline   Reply With Quote
Old 02-22-2010, 07:34 AM   #2
scottsmith
Junior Member
 
Location: St. Louis, MO, U.S.

Join Date: Feb 2010
Posts: 1
Default re: analysis tracking

We presented our internal system at CSHL a few months ago, but sadly do not have it packaged to work outside of the center yet.

It will hopefully be available for download in the next few months though. I will be sure to post as soon as it is...

Scott Smith
Manager, Application Programming and Development
Analysis Pipeline
The Genome Center
Washington University School of Medicine
scottsmith is offline   Reply With Quote
Old 02-22-2010, 07:41 AM   #3
aurelielaugraud
Member
 
Location: lyon

Join Date: Aug 2009
Posts: 37
Default

thanks a lot, that would be very helpful. just for me to know, which technology/language does it use ?
aurelielaugraud is offline   Reply With Quote
Old 02-22-2010, 07:46 AM   #4
drio
Senior Member
 
Location: 4117'49"N / 24'42"E

Join Date: Oct 2008
Posts: 323
Default

Quote:
Originally Posted by aurelielaugraud View Post
Hello,
I am looking for a ind of LIMS that would not care of sample traceability but of the analysis traceability.
I would like to know if you are aware of soft (preferably free but I take all the answers) that would be able to keep all the information of which soft has been used, which version of this soft, where is the data ...

thanks a lot
I don't know how many instruments you have and what are you resources but I'd suggest you write your own LIMS. You'll have to invest some resources initially but it will pay off down the road since you'll full control of your tool.
__________________
-drd
drio is offline   Reply With Quote
Old 02-22-2010, 10:40 AM   #5
krobison
Senior Member
 
Location: Boston area

Join Date: Nov 2007
Posts: 747
Default

Pipeline Pilot is the commercial tool that is near the space you are speaking of.

This does seem to be something that is continually reinvented because (a) nobody likes the prior or (b) everyone wants complete control
krobison is offline   Reply With Quote
Old 02-22-2010, 01:57 PM   #6
ddgenome
Junior Member
 
Location: St. Louis, MO

Join Date: Apr 2009
Posts: 7
Default analysis information management system

Quote:
Originally Posted by aurelielaugraud View Post
thanks a lot, that would be very helpful. just for me to know, which technology/language does it use ?
The majority is written in object-oriented Perl.
__________________
David Dooling
ddgenome is offline   Reply With Quote
Old 02-23-2010, 01:40 AM   #7
aurelielaugraud
Member
 
Location: lyon

Join Date: Aug 2009
Posts: 37
Default

thanks for the replies and suggestions
aurelielaugraud is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:51 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO