I'm running mmseq to calculate expression from STAR (2-pass) alignments. Mmseq completes just fine, no errors in stderr/stdout. But, it seems that the *gz files I need to run mmcollapse are somehow incomplete/malformed.
zcatting any of the resulting files give an:
invalid compressed data--crc error
error.
anyone else run into this/know the solution?
zcatting any of the resulting files give an:
invalid compressed data--crc error
error.
anyone else run into this/know the solution?