Hello
There is a way to use the unmapped reads from tophat 1.4.1 to build a de novo assembly?
I ve been looking for programs to do this and I found SOAPdenovo.
But first, I tried to take a look at the reads (for blast analysis) and I cant convert the unmapped.fq.z tophat output.
I tried the fq_all2std.pl script but there is no fasta output.
Any clues?
Charley
There is a way to use the unmapped reads from tophat 1.4.1 to build a de novo assembly?
I ve been looking for programs to do this and I found SOAPdenovo.
But first, I tried to take a look at the reads (for blast analysis) and I cant convert the unmapped.fq.z tophat output.
I tried the fq_all2std.pl script but there is no fasta output.
Any clues?
Charley
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