Hi guys,
I have two whole genome sequence pf bacteria, mutant and wild type.
I got this annotates in RAST server. and when i try to compare any specific gene and gene product....there is some variation.
for example
In mutant type:
Name: ABC transporter permease protein CDS
Type: CDS
Total Length: 2517 (over 16 intervals)
Interval 16 Length: 501
Interval 16: 1,919,937 -> 1,920,437
Interval 16 Bases: ATCAATCGCGTCAGTCGTAAG...
Intervals: ...1,919,852 -> 1,919,893, 1,919,897 -> 1,919,935, 1,919,937 -> 1,920,437
Bases: GTGAGCAAAATGCGTAAAACA......
NCBI Join Type: join
db_xref: GO:0005215
db_xref: GO:0006810
db_xref: GO:0016020
translation: MSKMRKTILWKDAFQAITHSLGRYIAIILLIGLGTFAFTGLKMAGPDMRATGADFFNKHNLADVTITSNCGINSTDRMTIRNLSEVKKQRLAIFKxx...
product: ABC transporter permease protein
NCBI Feature Key: CDS
In wild type:
Name: ABC transporter permease protein CDS
Type: CDS
Length: 2541
Interval: 1,925,619 -> 1,928,159
Bases: ATGCGTAAAACAATTCTATGG...
db_xref: GO:0005215
db_xref: GO:0006810
db_xref: GO:0016020
translation: MRKTILWKDAFQAITHSLGRYIAIILLIGLGTFAFTGLKMAGPDMRATGADFFNKHNLADVTITSNCGINSTDRMTIRNLSEVKKATFGYFQDVKNK...
product: ABC transporter permease protein
NCBI Feature Key: CDS
can anyone tell me why it shows the gene info as intervals..its happening in many of the CDS....can anyone help me...
I have two whole genome sequence pf bacteria, mutant and wild type.
I got this annotates in RAST server. and when i try to compare any specific gene and gene product....there is some variation.
for example
In mutant type:
Name: ABC transporter permease protein CDS
Type: CDS
Total Length: 2517 (over 16 intervals)
Interval 16 Length: 501
Interval 16: 1,919,937 -> 1,920,437
Interval 16 Bases: ATCAATCGCGTCAGTCGTAAG...
Intervals: ...1,919,852 -> 1,919,893, 1,919,897 -> 1,919,935, 1,919,937 -> 1,920,437
Bases: GTGAGCAAAATGCGTAAAACA......
NCBI Join Type: join
db_xref: GO:0005215
db_xref: GO:0006810
db_xref: GO:0016020
translation: MSKMRKTILWKDAFQAITHSLGRYIAIILLIGLGTFAFTGLKMAGPDMRATGADFFNKHNLADVTITSNCGINSTDRMTIRNLSEVKKQRLAIFKxx...
product: ABC transporter permease protein
NCBI Feature Key: CDS
In wild type:
Name: ABC transporter permease protein CDS
Type: CDS
Length: 2541
Interval: 1,925,619 -> 1,928,159
Bases: ATGCGTAAAACAATTCTATGG...
db_xref: GO:0005215
db_xref: GO:0006810
db_xref: GO:0016020
translation: MRKTILWKDAFQAITHSLGRYIAIILLIGLGTFAFTGLKMAGPDMRATGADFFNKHNLADVTITSNCGINSTDRMTIRNLSEVKKATFGYFQDVKNK...
product: ABC transporter permease protein
NCBI Feature Key: CDS
can anyone tell me why it shows the gene info as intervals..its happening in many of the CDS....can anyone help me...
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