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Old 03-11-2015, 10:02 AM   #1
sandesh
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Location: TN

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Default Construct phylogenetic tree from SNP data?

Hello,

I need to construct phylogenetic tree using SNP data.
Lets say, 100 samples with 50 SNPs.
Is there any software?
or any way that I can try.

Thanks for all suggestions
Sandesh
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Old 03-11-2015, 10:36 AM   #2
themerlin
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How do you have you SNP data arranged? If it is a multi-FASTA, you should be able to build a tree with most tree building applications. If it's in another format, you'll likely need to get it into multi-FASTA or another sequence alignment format.
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Old 03-11-2015, 10:45 AM   #3
sandesh
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It is like this:
L 1 2 3
S1 AA GC TT
S2 TT CC CC
S3 AT GC TC

How can we make multi fasta from this one?
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