SEQanswers

Go Back   SEQanswers > Site News > Wiki Discussion



Similar Threads
Thread Thread Starter Forum Replies Last Post
HPC cluster : make error : make[2]: *** [bundles.o] Error 1 jor12345 Bioinformatics 5 11-08-2013 11:02 AM
BWA installation failed after "make" command in Linux rzeng Bioinformatics 2 09-05-2013 03:04 AM
Which cloumn to take from SV Detect to make bed format to make it running on BEdtools vishal.rossi Bioinformatics 1 05-16-2013 03:59 AM
running IGV from command line epi Bioinformatics 0 02-29-2012 07:50 AM
Running 454 mapper by command line CLI Jeca Bioinformatics 11 04-18-2011 01:19 AM

Reply
 
Thread Tools
Old 07-09-2014, 01:11 AM   #1
neoanderson007
Junior Member
 
Location: India

Join Date: Jul 2014
Posts: 1
Exclamation DeFuse: Error while running make command

Hello Everyone !!

I am installing a software called DeFuse [for Gene Fusion].
While running 'make' command, I am getting this error:

]# make
________________
Command Output :

g++ -O3 -g -DDEBUG_CHECKS -I. -I../include -I../external/samtools-0.1.8 -I../external/zlib-1.2.5 -I../external/BamTools-2.0/ -I../external/BamTools-2.0/api -c -o initsplitalign.o initsplitalign.cpp
In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h:66,
from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/vector:61,
from Common.h:13,
from initsplitalign.cpp:8:
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h: In instantiation of ‘std:air<const int, SplitAlignment>’:
.
.
.
.
.
/usr/include/boost/unordered/unordered_map.hpp:392: instantiated from ‘T& boost::unordered_map<Key, T, Hash, Pred, Alloc>:perator[](const Key&) [with Key = int, T = SplitAlignment, Hash = boost::hash<int>, Pred = std::equal_to<int>, Alloc = std::allocator<std:air<const int, SplitAlignment> >]’
initsplitalign.cpp:100: instantiated from here
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h:84: error: using invalid field ‘std:air<_T1, _T2>::second’
make: *** [initsplitalign.o] Error 1

Do anyone has an idea, why I am getting this error and how can I solve it ??
( I have attaced full error OUTPUT - filename : "error_of_make.txt" )

Thanx in advance,
Neo
Attached Files
File Type: txt error_of_make.txt (5.1 KB, 2 views)

Last edited by neoanderson007; 07-09-2014 at 01:14 AM. Reason: It is taking the file content as an HTML content
neoanderson007 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:33 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO