I am having a problem with the tview option in samtools.
I am using this command
samtools tview 5673_5_t8.sortedbam.bam ./genomes/NC_013316.fna
but keep getting this error -
[bam_index_load] fail to load BAM index.
I have previously used this exact command to view the file correctly, but now it wont work!!
Is anyone else having similar problems? I have tried to index the sorted bam file, but this doesn't help either.
Has anyone any suggestions?
Cheers
Emma
I am using this command
samtools tview 5673_5_t8.sortedbam.bam ./genomes/NC_013316.fna
but keep getting this error -
[bam_index_load] fail to load BAM index.
I have previously used this exact command to view the file correctly, but now it wont work!!
Is anyone else having similar problems? I have tried to index the sorted bam file, but this doesn't help either.
Has anyone any suggestions?
Cheers
Emma
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