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Old 02-21-2013, 09:06 AM   #1
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Location: US

Join Date: May 2012
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Question 11th (last) column in the result.txt from tophat-fusion-post

I run the tophat 2.0.7 with --fusion-search. Then I run tophat-fusion-post. I got the result.txt. The table has 11 columns. The 11th column is new, and it is not explained in the table description provided by the author of the tophat fusion program. Could somebody tell me what the 11th (last) column is? An example row from the table: MCF7,USP32,chr17,58342772,PPM1D,chr17,58679978,2,2,3,945.45
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Old 02-25-2013, 04:45 AM   #2
Location: Netherlands

Join Date: Jul 2012
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The 11th column is the fusion's score. This score is used to rank the fusion candidates. The higher the score, the more 'evidence' for a particular fusion.
More details about this fusion score can be read in tophat fusion's paper:
TopHat-Fusion: an algorithm for discovery of novel fusion transcripts,
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bioinformatics sequencing, tophat 2.0.7, tophat-fusion, tophat-fusion-post

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