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Old 02-06-2019, 03:19 PM   #1
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Default cuffnorm (from cufflinks package) masks highly abundant genes???

I compared the cuffnorm FPKM outputs with cuffdiff FPKM outputs for the same sets of samples, and found that some highly abundant genes identified by cuffdiff were actually shown to be 0 in cuffnorm outputs.

Has anyone had the similar issue?


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