Hi all. I have a plant transcriptome assembled using Trinity that I have annotated with interpro and mapped GO ids to the individual transcripts such that I have a list such as :
comp1_c1_seq1 : 0034308
comp1_c2_seq2 : 0061077
comp1993_c1_seq1: 0055044
... etc.
I wish at this point to analyse and visualize the distribution of these ontologies. i.e. quantity by category/subcategory.
I know Blast2go has such functions but I'd need re-annotate through their pipeline. The only software I've found that performs this is Wego, but this is a web based and max sequence limit means I need to separate my assembly set into 8 subsets.
Can anyone recommend a tool that will take a contig/GO list and generate abundance distributions from it? Thanks very much!
comp1_c1_seq1 : 0034308
comp1_c2_seq2 : 0061077
comp1993_c1_seq1: 0055044
... etc.
I wish at this point to analyse and visualize the distribution of these ontologies. i.e. quantity by category/subcategory.
I know Blast2go has such functions but I'd need re-annotate through their pipeline. The only software I've found that performs this is Wego, but this is a web based and max sequence limit means I need to separate my assembly set into 8 subsets.
Can anyone recommend a tool that will take a contig/GO list and generate abundance distributions from it? Thanks very much!
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