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Old 06-03-2020, 11:10 AM   #1
maxbio
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Location: Amherst

Join Date: Jun 2019
Posts: 3
Default Converting DIAMOND output to fasta format

Hello all,

I am trying to convert a DIAMOND output from a reference genome into a fasta file so I can use it as a database for subsequent DIAMOND annotations. Currently, the file is in .txt format with the columns going


Gene ID -- CAZy ID -- % Identical -- Length -- Mismatches -- Gap Open -- Gene Start -- Gene End -- CAZy Start -- CAZy End -- E Value -- Bit Score


As of now, I don't necessarily have an idea of how to figure out the sequences that correspond to each row, so I'm not sure how to really parse the output file to create a fasta file. Any help or advice would be much appreciated.
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