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Old 03-27-2013, 09:28 PM   #1
Benji_JP
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Location: Regina, SK, Canada

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Default Bacterial .vcf file annotation

Hi,

Most .vcf file annotation programs are geared towards Human genome data. I am wondering if anyone has found a good program for annotation and prediction of .vcf files for bacterial genomes.

Thanks
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Old 03-31-2013, 11:37 PM   #2
me_myself_andI
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You might want to check out FreeBayes, and possibly SNVer or LoFreq

EDIT: these are for variant calling only!

Andreas

Last edited by me_myself_andI; 04-07-2013 at 11:39 PM.
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