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Old 07-01-2014, 05:59 PM   #1
Lv Ray
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Post How to get SNP array data ?

Hi ,dears.
I want to download some SNPs Array data. Such as a paper , they genotyped some samples by Illumina Porcine 60KSNPs array, I want get the raw data(before their genotyping ) if these data are public. Is any database to store them? How about Ensemble...
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Old 07-10-2014, 09:17 AM   #2
mbblack
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Why not just contact one of the authors of the paper, and ask them? Their contact information should be on the publication, or easily found with a web search.

There are numerous public SNP databases, so its impossible to tell you which one some particular unknown publication's data may be in.
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Old 07-10-2014, 09:38 AM   #3
Richard Finney
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Check NCBI Geo ...

http://www.ncbi.nlm.nih.gov/geo/quer...i?acc=GPL11379

They might have some raw data, but be careful sometimes it's processed.

This one claims some raw data ...
http://www.ncbi.nlm.nih.gov/geo/quer...i?acc=GSE26436
Supplementary file Size Download File type/resource
GSE26436_raw_data.txt.gz 1.3 Mb (ftp)(http) TXT
GSE26436_summary.xls.gz 7.0 Mb (ftp)(http) XLS

Last edited by Richard Finney; 07-10-2014 at 09:40 AM.
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Old 07-10-2014, 11:38 PM   #4
Lv Ray
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Thank you!I will be careful to process them!
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