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Old 07-01-2014, 05:59 PM   #1
Lv Ray
Location: GZ,China

Join Date: Jun 2014
Posts: 42
Post How to get SNP array data ?

Hi ,dears.
I want to download some SNPs Array data. Such as a paper , they genotyped some samples by Illumina Porcine 60KSNPs array, I want get the raw data(before their genotyping ) if these data are public. Is any database to store them? How about Ensemble...
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Old 07-10-2014, 09:17 AM   #2
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Location: Research Triangle Park, NC

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Why not just contact one of the authors of the paper, and ask them? Their contact information should be on the publication, or easily found with a web search.

There are numerous public SNP databases, so its impossible to tell you which one some particular unknown publication's data may be in.
Michael Black, Ph.D.
ScitoVation LLC. RTP, N.C.
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Old 07-10-2014, 09:38 AM   #3
Richard Finney
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Location: bethesda

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Posts: 700

Check NCBI Geo ...

They might have some raw data, but be careful sometimes it's processed.

This one claims some raw data ...
Supplementary file Size Download File type/resource
GSE26436_raw_data.txt.gz 1.3 Mb (ftp)(http) TXT
GSE26436_summary.xls.gz 7.0 Mb (ftp)(http) XLS

Last edited by Richard Finney; 07-10-2014 at 09:40 AM.
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Old 07-10-2014, 11:38 PM   #4
Lv Ray
Location: GZ,China

Join Date: Jun 2014
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Thank you!I will be careful to process them!
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snp arrays

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