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Thread | Thread Starter | Forum | Replies | Last Post |
Google maps update: 1442 instruments in 486 labs | james hadfield | General | 4 | 04-23-2018 11:01 AM |
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#21 |
Junior Member
Location: Wisconsin Join Date: Apr 2009
Posts: 1
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There is one GAIIx at the University of Wisconsin - Madison
University of Wisconsin Biotechnology Center Sequencing Facility 425 Henry Mall, Madison, WI 53706 |
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#22 |
Junior Member
Location: Germany Join Date: Aug 2009
Posts: 1
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Hello James,
There are further 2nd Generation Sequencing devices. machines: 2x GAIIx 1x GS FLX address: Fritz Lipmann Institute Leibniz Institute for Age Research Genome Analysis Beutenbergstr. 11 07745 Jena Germany URL: http://genome.fli-leibniz.de Cheers, Marco Last edited by MarcoG; 09-04-2009 at 02:39 PM. |
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#23 |
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Location: Shenzhen, China Join Date: Aug 2009
Posts: 1
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Hi James,
It's a great work you've done to integrate the information of sequencing centers world wide. For Beijing Genomics Institute in China, the headquater has moved to Shenzhen since May, 2007. We have 30 Illumina GAII, 1 ABI SOLiD, 1 Roche 454. Beijing Genomics Institute at Shenzhen Shenzhen, Guang Dong, China www.genomics.org.cn Thanks again for your effort. |
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#24 |
Junior Member
Location: London, UK Join Date: May 2008
Posts: 5
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Hi James, we have 1 GAII and 1 SOLiDv3. The Roche 454 was sent back!
Laurence |
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#25 |
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Location: Baltimore, MD Join Date: Jun 2009
Posts: 65
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Hello,
Great map! ![]() We have 1 GAII at UUSM from UNAM, Mexico. http://uusm.unam.mx/ It's new for us, so the website is not complete right now, but at least there is the contact info. Greetings, Leonardo
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L. Collado Torres, Ph.D. student in Biostatistics. |
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#26 |
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Location: USA Join Date: Apr 2009
Posts: 36
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2 GAIIs and 5 SOLiDs at TGen in Phoenix (www.tgen.org). Home of Craig et al, Nature Methods 2008 (bar-coded multiplexed sequencing).
445 N. 5th Street Phoenix, AZ. 85004 |
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#27 |
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Location: Baltimore, MD Join Date: Jun 2009
Posts: 65
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Just a detail about UUSM. It's located at Cuernavaca and not Mexico City.
Thanks for adding it ![]() Leonardo
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L. Collado Torres, Ph.D. student in Biostatistics. |
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#28 |
Junior Member
Location: Spokane WA Join Date: Mar 2008
Posts: 1
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Stanford has a Heliscope in Steve Quake's department.
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#29 |
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Location: France Join Date: Feb 2008
Posts: 1
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Hi James,
We are a core facility with 1 GAII at MGX (3 GAII in november) http://mgx.transcriptome.eu Montpellier GenomiX (MGX) Institut de Génomique Fonctionnelle 141 rue de la cardonille 34094 Montpellier Cedex Cheers, Christelle |
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#30 |
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Cambridge, UK Community Forum Location: Cambridge, UK Join Date: Feb 2008
Posts: 221
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Nope, the map does not allow this kind of info to be easily extracted. There are almost 150 sites listed as having next-gen sequencers. Most of these have multiple instruments and some have upwards of 40. I would guess the map captures around 400+ instruments, maybe more.
Keep on adding stuff everyone! |
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#31 |
Senior Member
Location: Stockholm, Sweden Join Date: Feb 2008
Posts: 319
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Six Illumina GA machines
One SOLiD One Roche 454 (there may be more, not sure) Genome Institute of Singapore 60 Biopolis Street #02-01 Genome Singapore 138672 |
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#32 |
Moderator
Cambridge, UK Community Forum Location: Cambridge, UK Join Date: Feb 2008
Posts: 221
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Thanks to everyone for looking at the GoogleMap and adding information,
there have been over 100,000 views! There is now an updated and improved version which you can find at http://pathogenomics.bham.ac.uk/hts/ The old version is now locked for future edits but will be periodically updated from the new database. The new site allows you to add new sites, update sites with platforms and capacity and correct any errors you find on the map yourself. The new map has a number of new features. Sites are clustered together to make it easier to navigate high-density regions. You can filter by individual platform, for example "show me all sites which have Illumina & SOLiD". There is more information held about each site. All the work on the new map has been done by Nick Loman at University of Birmingham, I really must thank him for taking my idea and making it much more user friendly. We'd be grateful for any feedback if you find any small problems or have suggestions for improving the interface further. The map was put together in the first place to show how many places had installed systems. I think when I first made it there were about the same number of Illumina's world-wide as Broad has currently. There has been phenomenal growth in next-gen technologie. And of course, for those interested in the question of which platform is in the lead, we will be putting league tables up shortly. But we wanted to give the community some time to help get the map as accurate as possible. Look out for the tables next week. Hopefully this map can help you find someone close to you to collaborate with, ask questions or just go to the pub and join in nerdy conversations about your first sequences being 350bp on an autorad. DNA bp is the next MB of Ram! |
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#33 |
Senior Member
Location: Birmingham, UK Join Date: Jul 2009
Posts: 356
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Thank you James! I really hope you all like the new site. Please do take the time to check the entry for your institute is as up-to-date as possible, and add missing facilities if you know about them. We'd be keen to get feedback on the usability and any features that would improve the site further. Obviously league tables are the next thing to implement!
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#34 |
Senior Member
Location: Palo Alto Join Date: Apr 2009
Posts: 213
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I tried adding our site to the map, but right-clicking the map did nothing. I'm using Firefox 3.0.15 on a Macbook Pro.
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#35 |
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Location: Birmingham, UK Join Date: Jul 2009
Posts: 356
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Thanks for the feedback. I gave it a try on Firefox 2.0 on the Mac and it seemed to work. Did you try CTRL-CLICK on the map? I have found some references to there being a possible bug in Firefox 3 and right-click handling so perhaps that's the issue (http://code.google.com/p/gmaps-api-i.../detail?id=377). Anyway, if you still have problems try going directly to http://pathogenomics.bham.ac.uk/hts/add/ and dragging the marker to the correct place (you'll need to zoom out a bit).
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#36 |
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Location: Marseille France Join Date: Jan 2009
Posts: 23
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Yes, the map is very nice and very useful. It is also still very incomplete, at least for two countries I know fairly well i.e. France and Taiwan (there are at least five second-gen systems in Taiwan that I know of). I'll be collecting the information with the correct institution names for you.
Cheers, Bertrand
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Bertrand Jordan Marseille-Nice Genopole Luminy Science Park 13288 Marseille, FRANCE |
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#37 |
Senior Member
Location: Birmingham, UK Join Date: Jul 2009
Posts: 356
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Great, thank you Bertrand!
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#38 |
Junior Member
Location: India Join Date: Dec 2008
Posts: 7
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Dear James,
Appreciate if you could add Xcelris Labs from Gujarat, India in your Google map too. We are using ABI SOLiD v3 and Roche 454 for Whole genome sequencing studies. Congratulations for such an excellent work................ Regards, DSB |
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#39 |
Moderator
Cambridge, UK Community Forum Location: Cambridge, UK Join Date: Feb 2008
Posts: 221
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Dear All,
Please try and add updates and new labs yourself. This is the intention of the new map, it is interactive and does not require effort by a single person. James. |
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#40 |
Moderator
Cambridge, UK Community Forum Location: Cambridge, UK Join Date: Feb 2008
Posts: 221
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The new link for the google map is now, http://pathogenomics.bham.ac.uk/hts. You can add stuff and sort by instrument here now.
Enjoy. |
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