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Old 02-14-2014, 01:22 PM   #1
wonaya
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Default QC for replicates in ChIP-seq

Hi, I have some ChIP-seq data to QC.
I was browsing for a pipeline where you can compare between biological replicates for their similarities, but haven't had any luck.
Is there a standard algorithm people use for this besides viewing the mapped tracks?
Thanks!
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Old 07-18-2014, 05:18 AM   #2
rory
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The ChIPQC package in Bioconductor will show how all your ChIPs compare. It was designed specifically for dealing with replicates.

-Rory
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