Hi,
Do you know if it is possible to obtain such statistics from the .bam file:
Total Unique - total reads aligning to only a single location in the reference
U0 - # of unique hits with 0 mismatches
U1 - # of unique hits with 1 mismatches
U2 - # of unique hits with 2 mismatches
R012 - # of hits aligning to multiple location in the reference with 0,1 or 2 mismatches
NM - # of reads without a match to the reference
(I know samtools flagstat but it is not what I need)
Thanks in advance
Do you know if it is possible to obtain such statistics from the .bam file:
Total Unique - total reads aligning to only a single location in the reference
U0 - # of unique hits with 0 mismatches
U1 - # of unique hits with 1 mismatches
U2 - # of unique hits with 2 mismatches
R012 - # of hits aligning to multiple location in the reference with 0,1 or 2 mismatches
NM - # of reads without a match to the reference
(I know samtools flagstat but it is not what I need)
Thanks in advance
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