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  • CHIP-Seq analysis

    I'm very new in ChIP Seq data analysis.

    Is there any CHIP Seq analysis pipeline that I can use? Any tutorial of CHIP Seq data analysis?

    Thanks,
    Slny

  • #2
    Hi slny,

    Have a look at this pipeline. It has been set up by the ENCODE project as a reference for ChIPseq analysis.

    Access Google Sites with a personal Google account or Google Workspace account (for business use).


    By the way, I'd like to know which is the opinion of the bioinformatic analysts community about this particular ENCODE pipeline.



    With best wishes

    Comment


    • #3
      Hi, it's an old thread but I have a comment...

      I had to re-run the same pipeline on the same ChIPseqs using actually the ENCODE guideline and I am facing something I didn't expect: I do not get the same results! Not by far but still different. Did you experience that? Can it be due to the idr step?

      Comment

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