Hi,
I want to align nextgen seq reads that should only partially align to one reference seq. I'm most interested in the part of the read that doesnt align to the reference, but need the aligned portion to filter for it. What aligner would work best? BFAST? I'm working on a Mac OSX to start.
Thanks much!
-V
I want to align nextgen seq reads that should only partially align to one reference seq. I'm most interested in the part of the read that doesnt align to the reference, but need the aligned portion to filter for it. What aligner would work best? BFAST? I'm working on a Mac OSX to start.
Thanks much!
-V
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