Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
454 - Transcriptome SNPs Detection Giorgio C Bioinformatics 3 02-12-2013 12:21 AM
Finding Alternative splicing events from 454 transcriptome ketan_bnf Bioinformatics 5 03-26-2011 03:53 AM
Coverage required to call SNPs from 454 data? prm36 Bioinformatics 0 02-08-2011 08:57 AM
SNPs discovery with 454 pfranchini General 0 03-01-2010 11:43 PM
Finding Raw 454 Data foolishbrat 454 Pyrosequencing 3 09-06-2009 02:09 PM

Thread Tools
Old 03-11-2011, 12:45 AM   #1
Junior Member
Location: Germany

Join Date: Dec 2010
Posts: 4
Default Finding SNPs in exons from 454 Data


I would like some adivce on what software tools to detect snps on 454 data. I want to be able also to exlude snp detection on repetitive, duplicated, low complexity regions, etc... ideally identifying SNPs only in regions harbouriong putative exons.

The approach used so far has been using CLC genomic workbench for reference assembly of single reads, and identification of Snps, but results are greatly affected by these repetitive regions, which so far Im unaware of how to avoid.

thanks for any input.

genehunter2 is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:08 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO