Hello,
I have recently finished assembling RNAseq data using Trinity. I am interested in finding an efficient way to identify splice variants.
All the tools I have come across do this by mapping short reads onto a reference genome (which I do not have).
Does anybody know a tool or can anyone think of a way to efficiently do this?
Cheers,
T
I have recently finished assembling RNAseq data using Trinity. I am interested in finding an efficient way to identify splice variants.
All the tools I have come across do this by mapping short reads onto a reference genome (which I do not have).
Does anybody know a tool or can anyone think of a way to efficiently do this?
Cheers,
T
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