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Old 08-03-2009, 05:19 PM   #1
Location: South East Asia

Join Date: Nov 2008
Posts: 44
Default Finding Raw 454 Data

Is there any repository where I can download raw 454 Data?

I am aware of NCBI - SRA. But it comes in forms of FASTQ.
It does not suits my need for assessing insertion and deletion.
For they cannot be accounted based on the quality score only(?)
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Old 08-07-2009, 02:15 AM   #2
Location: Oslo, Norway

Join Date: Nov 2008
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The SRA also allows you to download sff files...
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Old 08-07-2009, 04:58 AM   #3
Location: Germany

Join Date: May 2008
Posts: 79

Originally Posted by flxlex View Post
The SRA also allows you to download sff files...
Nope, not anymore. They removed it since a few months.

In the case of 454 paired-end data that's utterly bad as the FASTQ files one can download are riddled over and over with linkers. At least the data sets I looked at.

Been a long time since I wanted to write them about that ... I just don't find the time.

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Old 09-06-2009, 02:09 PM   #4
Peter (Biopython etc)
Location: Dundee, Scotland, UK

Join Date: Jul 2009
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Some of the in progress projects at the Sanger Institute make raw SFF files available.
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