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  • maq map - Assertion 'matches' failed


    Hello,

    I am running maq 0.7.1. When I run the maq map command with the following options:
    maq map -m 0.005 -n 2 -u s512a.poor.unmap -H s512a.multiple.mismatch My.bfa s51a.bfq s52a.bfq

    I am getting the error - Assertion 'matches' failed, after which the command gets aborted. Any idea how this can be rectified?

    Thanks,
    Anamika
    Last edited by AnamikaDarwin; 11-23-2008, 08:15 AM.

  • #2
    Sorry. That is insufficient memory. You should split your read files into smaller chunks (say 2 million reads per job). Maq's memory is largely determined by the number of reads in the bfq.

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