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Old 05-09-2013, 07:20 PM   #1
Junior Member
Location: Hawaii

Join Date: Jan 2013
Posts: 6
Default Time to run variant caller plugin for Ion Torrent

I want to process some mouse genomes on an ion torrent with a 10G chip and I'd like to use the variant caller plugin. Does anyone have any idea how long that could take to run on one of their servers?
Thank you!
g3n3 is offline   Reply With Quote
Old 05-13-2013, 05:26 PM   #2
Location: Rockville, MD

Join Date: Apr 2011
Posts: 23

The PGM doesn't have a 10G chip.

Do you mean the Proton system? That will get you about 100M reads at 200bp; should take a couple of hours on the hardware that ships with the Proton (if you use the Life Tech variant caller).
jonathanjacobs is offline   Reply With Quote
Old 08-21-2013, 04:05 PM   #3
Location: washington

Join Date: Aug 2013
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Default Torrent Suite for Mac

I was also wondering if there is any manuals or anything about how to use the torrent suite modules such as the analysis module
lwhitmore is offline   Reply With Quote

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