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Old 09-26-2015, 03:48 PM   #1
Junior Member
Location: usa

Join Date: Sep 2015
Posts: 1
Default Dotplot for nucleotide sequencies


I'm new in bioinformatics and I'm trying to use some of the dotplot programs (dotmatcher, ugene) two plot two homologous DNA sequences.

The first question is which program is better/easier to use.

Secondly, I'm having really hard time to understand what is the correct windows size and stringency number.

If anyone can help me I would appreciated a lot.

Thank you.
biod is offline   Reply With Quote

alignment, dotplot

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