SEQanswers

Go Back   SEQanswers > General



Similar Threads
Thread Thread Starter Forum Replies Last Post
NUCmer dotplot orientation struggler Bioinformatics 0 05-29-2013 05:25 AM
N vs Z nucleotide joskee SOLiD 5 06-21-2012 05:48 AM
Nucleotide blast help please? LeserattePD Bioinformatics 0 04-15-2012 05:43 AM
Coverage per nucleotide jjk RNA Sequencing 3 10-03-2011 10:15 AM
Nucleotide distribution useful? foxyg Bioinformatics 2 09-21-2010 10:11 AM

Reply
 
Thread Tools
Old 09-26-2015, 03:48 PM   #1
biod
Junior Member
 
Location: usa

Join Date: Sep 2015
Posts: 1
Default Dotplot for nucleotide sequencies

Hi!

I'm new in bioinformatics and I'm trying to use some of the dotplot programs (dotmatcher, ugene) two plot two homologous DNA sequences.

The first question is which program is better/easier to use.

Secondly, I'm having really hard time to understand what is the correct windows size and stringency number.

If anyone can help me I would appreciated a lot.

Thank you.
biod is offline   Reply With Quote
Reply

Tags
alignment, dotplot

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:10 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO