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  • How can Cuffnorm output give gene names in addition to gene id from input GTF file

    Hi All,

    I need a little help, the output of cuffnorm from the genes.fpkm_table file is as follows:

    tracking_id q1_0 q2_0
    ECDH10B_0001 0 0
    ECDH10B_0002 12.7841 26.1493
    ECDH10B_0003 20.8691 21.9675
    ECDH10B_0004 25.1604 47.0917

    How can I include the gene name in the output file in addition to the gene id which is also present in the input GTF file that I am using from ensembl. I am not discovering any new novel transcripts.

    Can any one please help.

    Thank you
    Yaseen

  • #2
    Cross-posted with https://www.biostars.org/p/190114/#190158

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