Dear All
Just want to know if anyone has relevant experiences in calling INDELS using Pindel on SOLiD data. We used Pindel on Illumina samples (bam files) with good outcome but now when we moved to SOLid data (bam files, already mapped to reference genome), all I got are empty output files
I have very little experience with SOLiD data, can anyone share with me your experience in applying Pindel to SOLiD data? What procedure did u go through to get the results?
Thanks
Just want to know if anyone has relevant experiences in calling INDELS using Pindel on SOLiD data. We used Pindel on Illumina samples (bam files) with good outcome but now when we moved to SOLid data (bam files, already mapped to reference genome), all I got are empty output files
I have very little experience with SOLiD data, can anyone share with me your experience in applying Pindel to SOLiD data? What procedure did u go through to get the results?
Thanks
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