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Old 04-13-2011, 11:19 AM   #1
alexischr
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Location: Phoenix, Arizona

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Default Paired-sample (tumor/normal) somatic mutation detection software

Hi everyone,

I was wondering if anyone here that is working on cancer genomics would have experience with software for detecting tumor mutations using paired normal and tumor genomes (or exomes)? There are a few things out that I'm aware of (VarScan has added somatic support, the '-somatic' option in GATK's IndelGenotyper), but I'm not finding much more than that.

Thank you!

Alexis
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Old 04-14-2011, 04:56 AM   #2
RDW
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You might try this:

http://genome.wustl.edu/software/somaticsniper

See also:

http://www.ncbi.nlm.nih.gov/pubmed/20843826
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