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  • Understanding exomic fields

    Hi all,

    I got some WGS data in excel files, now I want to extract the exome from this data. There is one filter option called region which contains the following fields

    exonic
    splicing
    ncRNA
    UTR5
    UTR3
    intronic
    upstream
    downstream
    intergenic
    etc.

    I'm confusing here which fields are the exomic part and which are non coding? Is there anybody who can help?

  • #2
    exonic , UTR5 and UTR3

    Comment


    • #3
      thanks but what about following regions:

      exonic;splicing
      ncRNA_exonic
      ncRNA_UTR3
      ncRNA_UTR5

      Comment


      • #4
        I think splicing not including in the region of exome. also this can affect the function of protein. ncRNA is also the regulation element of genomic region.
        this is my opinion, how do you think?

        Comment


        • #5
          ncRNA = non coding RNA

          Comment


          • #6
            I mean whether these are included in the exome or not?

            Comment


            • #7
              Can anyone say anything more?

              Comment


              • #8
                You might need to supply more information. What is your data the output of? Have you checked the documentation to see what they say about all the different field options?

                That said, the clue was in the name somewhat. Non-coding RNAs don't encode protein, so I doubt you would want to include those in the exome (although I appreciate the terms are all open to a bit of wiggle room).

                Comment


                • #9
                  Following are the fields into which whole genome data is covered from which i need to take out the exome. Which fields below cover the exome part of the genome?

                  exonic
                  splicing
                  ncRNA
                  UTR5
                  UTR3
                  intronic
                  upstream
                  downstream
                  intergenic
                  exonic;splicing
                  ncRNA_exonic
                  ncRNA_UTR3
                  ncRNA_UTR5

                  Comment

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