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Hi,
is there away to have bowtie report the summary of reads processed and aligned to a file?
thanks,
is there away to have bowtie report the summary of reads processed and aligned to a file?
thanks,
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Hi,
you can simply redirect the output to a file using
after the bowtie call> output.txt
or you can use the pipe (|) and shell commands like grep, head, tail, awk etc. to filter the output. e.g.
...| grep "aligned reads" > output.txtLast edited by hanshart; 01-04-2012, 04:37 AM.
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