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Old 01-19-2015, 04:35 PM   #1
jake13
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Location: San Francisco

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Default Cuffnorm no cds or tss

I am trying to use cuffnorm after tophat and cuffquant. I am using the gencodevM3 annotation and have filtered it so that it only contains CDS and exon information. However, when I run cuffnorm on my samples it only writes information to the genes and isoform tables and leaves the CDS and tss tables empty. Does anyone have any ideas? Thanks
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