I'm using SOAPdenovo with 61-mer size and can't find an explanation to the mismatch that I see at the end of each contig (especially the short ones).
It doesn't affect my results, since this mismatched base is always covered by other contigs with correct base.
Could someone help me in understanding that?
It doesn't affect my results, since this mismatched base is always covered by other contigs with correct base.
Could someone help me in understanding that?