BS-Seq Public /Sharing Data

[zee]

Hi,

Does anybody know of a source of public BS-Seq data to validate methylation alignment on?
I'm looking for SEQ-PRB/FASTQ formatted short reads from the Illumina GA platform.

I found the Cokus dataset at http://epigenomics.mcdb.ucla.edu/BS-Seq/download.html but I cant make head or tail of what's in there or how to get at the actual reads. Can anybody help?

[zee]

I decompressed the Cokus et al., 2008, data and obtained a whole lot of directories and C programs. I cant run the C programs because I dont have a license for Matlab.

Anybody know what to do with these :

N1try2-L7-sig2_T-17.littleEndianDoubles.bin
N1try2-L7-sig2_T-18.littleEndianDoubles.bin
N1try2-L7-sig2_T-19.littleEndianDoubles.bin
N1try2-L7-sig2_T-20.littleEndianDoubles.bin
N1try2-L7-sig2_T-21.littleEndianDoubles.bin
N1try2-L7-sig2_T-22.littleEndianDoubles.bin
N1try2-L7-sig2_T-23.littleEndianDoubles.bin
N1try2-L7-sig2_T-24.littleEndianDoubles.bin
N1try2-L7-sig2_T-25.littleEndianDoubles.bin
N1try2-L7-sig2_T-26.littleEndianDoubles.bin
N1try2-L7-sig2_T-27.littleEndianDoubles.bin
N1try2-L7-sig2_T-28.littleEndianDoubles.bin
N1try2-L7-sig2_T-29.littleEndianDoubles.bin
N1try2-L7-sig2_T-30.littleEndianDoubles.bin
N1try2-L7-sig2_T-31.littleEndianDoubles.bin
N1try2-L7-sig2_T-32.littleEndianDoubles.bin
N1try2-L7-sig2_T-33.littleEndianDoubles.bin
N1try2-L7-sig2_T-34.littleEndianDoubles.bin
N1try2-L7-sig2_T-35.littleEndianDoubles.bin
N1try2-L7-sig2_T-36.littleEndianDoubles.bin


Are these the raw images from the Illumina machine and how do I produce some reads from this?

[forrest]

I don't how to convent these bin files to fastq/fasta file? Any one know how to do this? Thanks so much.