SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Cuffdiff promoter switch identification gik Bioinformatics 0 08-27-2012 06:49 AM

Reply
 
Thread Tools
Old 02-28-2020, 09:40 PM   #1
gen2prot
Member
 
Location: Hyderabad, India

Join Date: Apr 2010
Posts: 65
Default Promoter Identification programs

Hello All,

I would like to know if there are any specific programs out there that help to identify promoters in PLANTS. Specifically I am interested in identifying locations of TSS, TATA, CAAT and GC boxes. Command version would be best to have. I have tried TSSPlant, however, I found its web results to be inconsistent with the command line version. Also it gives only the putative TSS and TATA. Most other programs I found, are trained on Human or mouse data, that rely on having access to high-confidence TSS sites. I have high-confidence Start codon sites.

Please advice.

Thanks
Abhijit
gen2prot is offline   Reply With Quote
Reply

Tags
bioinformatics, promoter, tata box, tss

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 05:18 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO