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Old 03-05-2020, 08:27 PM   #1
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Location: South Korea

Join Date: Apr 2014
Posts: 8
Default Genome size estimation - Reg.

I would like to estimate plant mitochondrial genome size using Illumina pair-end (each one is 8 GB Raw Reads)
I used the following command for estimation:

./../bin/bin/bbmap/ in=trim_CKEMJ1.fastq in2=trim_CKEMJ2.fastq khist=hist.txt peaks=peaks.txt -Xmx188G


I found it in peaks.txt file.

Thank you

Last edited by bioramg; 03-05-2020 at 11:49 PM.
bioramg is offline   Reply With Quote

bbmap, genome size estimation, mitochondial genome

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