Hi,
I'm the new user of Artemis. I plan to use Artemis to view my gene prediction from GeneMark and Glimmer's result of my fungus genome.
Unfortunately, I'm facing a problem when I upload to view the gene prediction result of GeneMark and Glimmer at the same time.
Due to the overlap gene prediction between two different gene prediction program (GeneMark and Glimmer ), I unable to differentiate whether the viewer shown the result of GeneMark or Glimmer.
I'm plan to add the "Colour" label column in my GeneMark and Glimmer result file.
Unfortunately, after I added the "Colour" column, Artemis can't view the result properly
Below is the input file format that I have used to view the result in Artemis:
Fail to view the result in Artemis after I added the detaill of "Colour" column
Thanks for any experience user of Artemis to share your opinion to solve my problem.
I'm the new user of Artemis. I plan to use Artemis to view my gene prediction from GeneMark and Glimmer's result of my fungus genome.
Unfortunately, I'm facing a problem when I upload to view the gene prediction result of GeneMark and Glimmer at the same time.
Due to the overlap gene prediction between two different gene prediction program (GeneMark and Glimmer ), I unable to differentiate whether the viewer shown the result of GeneMark or Glimmer.
I'm plan to add the "Colour" label column in my GeneMark and Glimmer result file.
Unfortunately, after I added the "Colour" column, Artemis can't view the result properly
Below is the input file format that I have used to view the result in Artemis:
Code:
FT gene complement(1687575..1689053) FT /note="NODE_120.1.len:75266-31, orf00001, 1515..37" FT /label=orf00001 FT gene complement(1689257..1689964) FT /note="NODE_120.1.len:75266-31, orf00004, 2426..1719" FT /label=orf00004 FT gene complement(1689915..1690289) FT /note="NODE_120.1.len:75266-31, orf00005, 2751..2377" FT /label=orf00005
Code:
FT gene complement(1687575..1689053) FT /note="NODE_120.1.len:75266-31, orf00001, 1515..37" FT /label=orf00001 [COLOR="Red"]FT /colour=7 [/COLOR]FT gene complement(1689257..1689964) FT /note="NODE_120.1.len:75266-31, orf00004, 2426..1719" FT /label=orf00004 [COLOR="Red"]FT /colour=7 [/COLOR]FT gene complement(1689915..1690289) FT /note="NODE_120.1.len:75266-31, orf00005, 2751..2377" FT /label=orf00005 [COLOR="Red"]FT /colour=7 [/COLOR]
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