Hi to everybody,
I run
> java -jar GenomeAnalysisTK.jar -T DepthOfCoverage -R hg19.fasta -I sample.bam.sorted.bam -L chr22 --minMappingQuality 20 -o coverage.txt
and the script returns me different outputs:
1.sample_cumulative_coverage_counts
2. sample_cumulative_coverage_proportions
3. sample_interval_statistics
4. sample_interval_summary
5. sample_statistics
6. sample_summary
Anyone could explain me these outputs?
I run
> java -jar GenomeAnalysisTK.jar -T DepthOfCoverage -R hg19.fasta -I sample.bam.sorted.bam -L chr22 --minMappingQuality 20 -o coverage.txt
and the script returns me different outputs:
1.sample_cumulative_coverage_counts
2. sample_cumulative_coverage_proportions
3. sample_interval_statistics
4. sample_interval_summary
5. sample_statistics
6. sample_summary
Anyone could explain me these outputs?