I am wondering if it is possible to calculate the global coverage of my Illumina paired-end data against multiple exon regions (exome) via bedtools (coverageBed). I have my mapped results in a .bam file and the exon regions defined in a .bed file.
I don't want the coverage per exon, but all exon coverages counted to determine the global coverage.
Someone who can help me?
I don't want the coverage per exon, but all exon coverages counted to determine the global coverage.
Someone who can help me?
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