I am using the program htseq-count v0.5.3 with an standard sam file from the mapping of a set of paired end reads. Comparing this file with the output file that can be obtained with the option '-o', I've realized that the mapping for the last fragment (two lines) is missing. Furthermore, I check the resulting count and one mapping is missing as well.
Has anybody got the same results? Is there any fix to solve this?
Thank you.
Has anybody got the same results? Is there any fix to solve this?
Thank you.
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