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Old 06-03-2019, 07:41 AM   #1
hasuni_globin
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Location: Virginia

Join Date: Jun 2019
Posts: 2
Unhappy Glimmer3

Hey there,

I am currently using the newest version of Glimmer, Glimmer3.02. When running the g3-iterated-viral.csh script I get the "Failed to run Glimmer3" error at step 8 (glimmer3 also runs at step 4 and it worked just fine). The terminal reads "Segmentation fault (core dumped)". More specifically:

.
.
.Analyzing Sequence #9046
Start Find_Orfs
Start Score_Orfs
Start Process_Events
Start Trace_Back
Analyzing Sequence #9047
Start Find_Orfs
Start Score_Orfs
Segmentation fault (core dumped)

Some people suggest this has something to with glimmer3 not being able to access some memory (like a permission thing? this is unlikely because everything has rw permissions in my directory).... I'm sort of just lost at this point and am posting everywhere asking for help. Please help!!!!
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Old 06-03-2019, 08:23 AM   #2
hasuni_globin
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Join Date: Jun 2019
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Default

Core dump shows:

Program terminated with signal 11, Segmentation fault.
#0 0x000000000041fd5e in Complement (ch=-48 '\320') at gene.cc:531
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