We have used bcl2fastq on our local server for years, but a client has asked for untrimmed unfiltered raw reads. What's the easiest way to get these from a completed run, and still get demultiplexed fastq files? It looks like maybe removing the adapter se1quences from the sample sheet, and set TrimUMI to 0, but I'm not sure how to prevent quality trimming. Do we need a different software than bcl2fastq?
Thanks,
Peter
Thanks,
Peter
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