|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| Different FPKM values of cufflinks and cuffdiff | mrfox | Bioinformatics | 5 | 10-17-2012 02:10 PM |
| Cufflinks and cuffdiff FPKM values | combiochem | Bioinformatics | 12 | 10-14-2012 12:37 AM |
| Cuffcompare/cuffdiff changes FPKM values of same BAM in sequential runs | SEQond | RNA Sequencing | 2 | 10-17-2011 07:42 AM |
| Cuffdiff and zero FPKM values give enormous log ratio | altodor | Bioinformatics | 2 | 04-15-2011 09:01 AM |
| Different FPKM values of cufflinks and cuffdiff in latest version | mrfox | Bioinformatics | 1 | 11-23-2010 06:23 AM |
 |
|
|
Thread Tools |
02-09-2011, 07:58 AM
|
#1 |
|
Member
Location: california Join Date: Jan 2011
Posts: 26
|
Different fpkm values for cuffdiff and cuffcompare
Hi,
I have noticed that some of my FPKM values are 0 in the gene_exp.diff file.I did notice that it was not 0 in the transcripts.tmap file.Does anyone know why does this is happening. Thanks, Joji |
|
|
|
10-14-2012, 12:33 AM
|
#2 |
|
Member
Location: uk Join Date: Jul 2012
Posts: 56
|
hi did find an answer to this?
thanks, ib |
|
|
|
|
12-12-2012, 08:54 AM
|
#3 |
|
Member
Location: boston Join Date: May 2012
Posts: 29
|
I have the same problem, anybody has a clue?
|
|
|
|
|
12-12-2012, 05:14 PM
|
#4 |
|
I like code
Location: San Diego, CA, USA Join Date: Sep 2009
Posts: 438
|
You'd have to ask the authors about this one. I'm not sure why their expression assignment algorithm would make different decisions when cufflinks is run verses when cuffdiff is run.
|
|
|
|
|
| Thread Tools | |
|
|
