Rank In Soap denovo

sivasubramani · 08-26-2011, 02:02 AM

Dear all,
I am trying to use soap denovo tool for my large data assembly.
I have some doubts regarding that..

what is rank in config file
can we run multiple Kmers in a single run..??
Number of iterations it will follow..?? If it more than one, can we specify..??
can we specify minimum contig size needed in the output..??

ECO · 08-31-2011, 11:05 PM

Totally wrong place for this post. Apologies for not seeing it sooner. Welcome to the site, feel free to repost this in either the de novo forum or the Bioinfx forum.

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08-26-2011, 02:02 AM	#1
sivasubramani Member Location: India Join Date: Apr 2011 Posts: 14	Rank In Soap denovo Dear all, I am trying to use soap denovo tool for my large data assembly. I have some doubts regarding that.. what is rank in config file can we run multiple Kmers in a single run..?? Number of iterations it will follow..?? If it more than one, can we specify..?? can we specify minimum contig size needed in the output..??

08-31-2011, 11:05 PM	#2
ECO --Site Admin-- Location: SF Bay Area, CA, USA Join Date: Oct 2007 Posts: 1,358	Totally wrong place for this post. Apologies for not seeing it sooner. Welcome to the site, feel free to repost this in either the de novo forum or the Bioinfx forum.