Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
what does "hetero SNP/INDEL" look like in BWA-SW+Samtools shuang Bioinformatics 5 10-11-2011 09:44 AM
Running MAQ SNP/Indel detection/Assembly Tools on short aligners zee Bioinformatics 4 12-11-2009 02:41 PM
Nonsynonymous SNP (nsSNP) discovery tools? jpeaco02 Bioinformatics 2 11-08-2009 02:13 PM
Comparing SNP/indel detection tools on 454 dePhi 454 Pyrosequencing 2 03-07-2009 05:41 AM
Maq and indel discovery fadista General 0 09-02-2008 02:12 PM

Thread Tools
Old 10-04-2011, 09:18 AM   #1
Senior Member
Location: IL

Join Date: Jul 2011
Posts: 100
Default suitable tools for hetero SNP/INDEL discovery?

What would be the best software for discovering SNP/INDEL in both hetero and homo-zygote case? My data is from Sanger sequencing.

I tried bwa-sw with Samtools. It does not seem be able to distinguish hetero from bad-signal bases.
shuang is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 07:37 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO