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Old 02-03-2012, 06:28 AM   #1
dkrtndhkd
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Post what program can i use for calculating coverage?

as same as the title.

I'm NGS newbie and finding a useful tool for calculating coverage.

the story of experiment is like this;

capture all exons(no intron included!) of several genes(about 20) in human.

What i'm doing is very primitive...

seeing the bam file by samtools or IGV and confirm there result by eye and hand...

the exons are apart and about 20 genes -> there are about a few hundred regions to check...

please help me!!!
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Old 02-03-2012, 06:32 AM   #2
GenoMax
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Check this thread: http://seqanswers.com/forums/showthr...t=coverage+bam
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Old 02-03-2012, 06:39 PM   #3
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Thankyou
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