I like to build color-space indexing by bwa. The input fast should be in nucleotide space, so I use following command to index whole human genome:
>bwa index -c human.fasta
But segmentation fault occurred everytime like this,
[bwa_index] Pack nucleotide FASTA... 60.48 sec
[bwa_index] Convert nucleotide PAC to color PAC... 31.13 sec
[bwa_index] Reverse the packed sequence... 16.62 sec
[bwa_index] Construct BWT for the packed sequence...
Segmentation fault
Can anyone tell me why that happen?
thanks
>bwa index -c human.fasta
But segmentation fault occurred everytime like this,
[bwa_index] Pack nucleotide FASTA... 60.48 sec
[bwa_index] Convert nucleotide PAC to color PAC... 31.13 sec
[bwa_index] Reverse the packed sequence... 16.62 sec
[bwa_index] Construct BWT for the packed sequence...
Segmentation fault
Can anyone tell me why that happen?
thanks
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