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Old 08-06-2010, 06:06 AM   #1
bioenvisage
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Default Sam

Hello,

Ia there any tool to convert SAM format to SOAPaligner output format.

thanks

karthik
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Old 09-07-2010, 12:43 AM   #2
jayce_ocean
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Default convert .sam file to SOAPAligner

hi,

i am also looking on any tool which able to convert .sam file or .bam file into SOAPAligner '<Alignment.soap.sort.chrN> '

SOAPsnp command:
soapsnp -i <Alignment.soap.sort.chrN> -d <chrN.fasta> -o <chrN.consensus> -r 0.00005 e 0.0001 -t -u -L <Maximum Read Length> -M <chrN.mat>

thanks,
J.O
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