Sam

bioenvisage · 08-06-2010, 06:06 AM

Hello,

Ia there any tool to convert SAM format to SOAPaligner output format.

thanks

karthik

jayce_ocean · 09-07-2010, 12:43 AM

hi,

i am also looking on any tool which able to convert .sam file or .bam file into SOAPAligner '<Alignment.soap.sort.chrN> '

SOAPsnp command:
soapsnp -i <Alignment.soap.sort.chrN> -d <chrN.fasta> -o <chrN.consensus> -r 0.00005 –e 0.0001 -t -u -L <Maximum Read Length> -M <chrN.mat>

thanks,
J.O

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08-06-2010, 06:06 AM	#1
bioenvisage Member Location: it Join Date: Oct 2009 Posts: 40	Sam Hello, Ia there any tool to convert SAM format to SOAPaligner output format. thanks karthik

09-07-2010, 12:43 AM	#2
jayce_ocean Junior Member Location: location Join Date: Sep 2010 Posts: 5	convert .sam file to SOAPAligner hi, i am also looking on any tool which able to convert .sam file or .bam file into SOAPAligner '<Alignment.soap.sort.chrN> ' SOAPsnp command: soapsnp -i <Alignment.soap.sort.chrN> -d <chrN.fasta> -o <chrN.consensus> -r 0.00005 –e 0.0001 -t -u -L <Maximum Read Length> -M <chrN.mat> thanks, J.O